Solanum boliviense
Overview
| Genus | Solanum |
| Species | boliviense |
| Common Name | Hampatu papa, Qquita papa, Papa aromatica |
| Abbreviation | S. boliviense |
| Ploidy | Diploid |
| Chromosome Number | 2n=2x=24 |
| Genome Size | 740 Mb |
| Genome Assemblies | 2 |
| Cross Reference | NCBI taxon: 561126 |
Organism Image
Description
Solanum boliviense is primarily a Bolivian species, but is found from southern Peru to northern Argentina. A plant of poor soils, growing up to about the 13,750 foot elevation, where frosts occur fairly frequently. Plants variable in form, from low growing rosettes to erect plants reaching about 15 inches in height. Stolons two feet long or more. Tubers small and round, reaching about an inch in diameter, and sometimes moniliform (forming chains). Flowers blue to purple.
S genes
Solanum boliviense PG5076 S genes
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF9 | atg0186 | 744958 | 593920-595062 | Solanum tuberosum DM8.1, SLF9 | 98.7 | F-box domain |
| SLF13 | atg0192 | 4704495 | 1268177-1266975 | Solanum tuberosum DM8.1, SLF13 | 98.8 | F-box domain |
| SLF18 | atg0276 | 948369 | 7370-6252 | Solanum tuberosum DM8.1, SLF18 | 98.1 | F-box domain |
| SLF22 | atg0300 | 727765 | 464307-465446 | Solanum tuberosum DM8.1, SLF22 | 98.4 | F-box domain |
| SLF16 | atg0309 | 2267436 | 757496-758676 | Solanum tuberosum DM8.1, SLF16 | 99 | F-box domain |
| SLF11 | atg0462 | 1574548 | 873322-872204 | Solanum tuberosum DM8.1, SLF11 | 92.5 | F-box domain |
| SLF15 | atg0632 | 744151 | 212615-211356 | Solanum tuberosum DM8.1, SLF15 | 97.5 | F-box domain |
| SLF19 | atg0956 | 58776 | 33973-32861 | Solanum tuberosum DM8.1, SLF19 | 95.1 | F-box domain |
| SLF12ψ | atg1619 | 22530 | 15384-14238 | Solanum tuberosum DM8.1, SLF12 | 96.2 | - |
| SLF17 | hptg0007 | 5385092 | 1372243-1371062 | Solanum tuberosum DM8.1, SLF17 | 97.5 | F-box domain |
| SLF23 | hptg0007 | 5385092 | 1375501-1374341 | Solanum lycopersicoides KU960925.1, SLF23 | 94.8 | F-box domain |
| SLF5 | hptg0007 | 5385092 | 3978666-3977485 | Solanum tuberosum DM8.1, SLF5 | 95.1 | F-box domain |
| SLF12-2ψ | hptg0007 | 5385092 | 3987378-3988521 | Solanum tuberosum DM8.1, SLF12 | 96.4 | - |
| SLF5-2 | hptg0007 | 5385092 | 4241572-4240403 | Solanum tuberosum DM8.1, SLF5-2 | 97.5 | F-box domain |
| SLF7 | hptg0007 | 5385092 | 4333943-4332774 | Solanum tuberosum DM8.1, SLF7 | 97.1 | F-box domain |
| SLF6ψ | hptg0007 | 5385092 | 4365559-4364421 | Solanum tuberosum DM8.1, SLF6 | 92.6 | - |
| SLF20 | hptg0007 | 5385092 | 4413447-4412281 | Solanum tuberosum DM8.1, SLF20 | 98.8 | F-box domain |
| SLF21 | hptg0007 | 5385092 | 4893196-4891973 | Solanum tuberosum DM8.1, SLF21 | 97.8 | F-box domain |
| SLF5-3 | hptg0086 | 2085067 | 170465-169275 | Solanum tuberosum DM8.1, SLF5 | 95.6 | F-box domain |
| SLF12-3ψ | hptg0086 | 2085067 | 175964-177129 | Solanum tuberosum DM8.1, SLF12 | 97 | - |
| SLF17-2 | hptg0086 | 2085067 | 230383-229202 | Solanum tuberosum DM8.1, SLF17 | 97.4 | F-box domain |
| SLF23-2 | hptg0086 | 2085067 | 252613-251456 | Solanum neorickii MG266239.1, SLF23 | 95.4 | F-box domain |
| SLF13-2 | ptg0049 | 9337377 | 7300549-7301751 | Solanum tuberosum DM8.1, SLF13 | 99.2 | F-box domain |
| SLF11-2ψ | ptg0049 | 9337377 | 8636476-8635364 | Solanum tuberosum DM8.1, SLF11 | 96.5 | - |
| SLF15-2ψ | ptg0075 | 3715618 | 526020-524764 | Solanum tuberosum DM8.1, SLF15 | 97.7 | - |
| SLF16-2 | ptg0075 | 3715618 | 2529114-2527934 | Solanum tuberosum DM8.1, SLF16 | 99.1 | F-box domain |
| SLF19-2 | ptg0082 | 16838494 | 12955649-12956761 | Solanum tuberosum DM8.1, SLF19 | 95.1 | F-box domain |
| SLF18-2 | ptg0082 | 16838494 | 12989868-12988750 | Solanum tuberosum DM8.1, SLF18 | 98.3 | F-box domain |
| SLF22-2ψ | ptg0102 | 1048459 | 769265-770404 | Solanum tuberosum DM8.1, SLF22 | 98.5 | - |
| S-RNase | ptg0106 | 4763254 | 27947-28189,28303-28728 | Solanum tuberosum MZ561410.1, SRNase-S7 | 99.4 | Ribonuclease T2 family |
| SLF4 | ptg0106 | 4763254 | 475793-474630 | Solanum pimpinellifolium KJ814871.1, SLF4 | 94.9 | F-box domain |
| SLF5-4 | ptg0106 | 4763254 | 585518-584349 | Solanum tuberosum DM8.1, SLF5-2 | 98.6 | F-box domain |
| SLF7-2 | ptg0106 | 4763254 | 635269-634100 | Solanum tuberosum DM8.1, SLF7 | 97.7 | F-box domain |
| SLF6-2ψ | ptg0106 | 4763254 | 670107-668969 | Solanum tuberosum DM8.1, SLF6 | 92.3 | - |
| SLF20-2 | ptg0106 | 4763254 | 717998-716832 | Solanum tuberosum DM8.1, SLF20 | 98.7 | F-box domain |
| SLF21-2 | ptg0117 | 3556321 | 1499548-1498325 | Solanum tuberosum DM8.1, SLF21 | 97.7 | F-box domain |
| SLF9-2 | ptg0117 | 3556321 | 2794220-2793078 | Solanum tuberosum DM8.1, SLF9 | 98.7 | F-box domain |
Downloads
The Solanum boliviense S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Solanum_boliviense |
Publications
Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.