PSIA-CNCB-NGDC

Overview

Genus	Solanum
Species	appendiculatum
Common Name	-
Abbreviation	S. appendiculatum
Ploidy	Diploid
Chromosome Number	2n=2x=24
Genome Size	680 Mb
Genome Assemblies	1
Cross Reference	NCBI taxon: 115661

Organism Image

Description

Solanum appendiculatum is a species of plants in the family nightshades. They are climbers. They have berries.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum appendiculatum

Solanum appendiculatum IUB_Sapp_1.0

S genes

Solanum appendiculatum IUB_Sapp_1.0 S genes

Query	Scaffold	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	JAGDQO010000068.1	2326959	639077-640336	Solanum tuberosum DM8.1, SLF15	93.7	F-box domain
SLF16Ψ	JAGDQO010000095.1	660410	629931-628751	Solanum tuberosum DM8.1, SLF16	95.7	-
SLF14Ψ	JAGDQO010000374.1	4334979	3120548-3121731	Solanum habrochaites KJ814931.1, SLF14	86.8	-
SLF13Ψ	JAGDQO010000374.1	4334979	3470949-3472140	Solanum tuberosum DM8.1, SLF13	92.2	-
SLF23Ψ	JAGDQO010000383.1	1523579	657022-655893	Solanum neorickii MG266239.1, SLF23	92.1	-
SLF20Ψ	JAGDQO010000567.1	1196453	458123-456976	Solanum tuberosum DM8.1, SLF20	91.3	-
SLF11Ψ	JAGDQO010000567.1	1196453	908896-910064	Solanum tuberosum DM8.1, SLF11	92.2	-
SLF9Ψ	JAGDQO010000772.1	1277400	1227827-1226680	Solanum tuberosum DM8.1, SLF9	89.9	-
SLF23	JAGDQO010001096.1	173243	45309-44182	Solanum neorickii MG266239.1, SLF23	89.3	F-box domain
SLF18	JAGDQO010001237.1	442619	75417-76532	Solanum tuberosum DM8.1, SLF18	93.9	F-box domain
SLF18-2	JAGDQO010001237.1	442619	83166-84281	Solanum tuberosum DM8.1, SLF18	93.6	F-box domain
SLF18-3	JAGDQO010001237.1	442619	91009-92121	Solanum tuberosum DM8.1, SLF18-2	93.6	F-box domain
SLF19	JAGDQO010001237.1	442619	102686-101574	Solanum lycopersicum SL2.31, SLF19	91.9	F-box domain
SLF10Ψ	JAGDQO010001842.1	131898	117588-116344	Solanum chilense KJ814888.1, SLF10	87.7	-
SLF3Ψ	JAGDQO010002730.1	106617	64269-65432	Solanum pennellii BK009230.1, SLF3	90.1	-

Downloads

The Solanum appendiculatum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)	S-gene_Solanum_appendiculatum

Publications

Wu M, Haak DC, Anderson GJ, Hahn MW, Moyle LC, Guerrero RF. Inferring the Genetic Basis of Sex Determination from the Genome of a Dioecious Nightshade. Mol Biol Evol. 2021 Jun 25;38(7):2946-2957. doi: 10.1093/molbev/msab089.