PSIA-CNCB-NGDC

Overview

Genus	Solanum
Species	andreanum
Common Name	Wild potato
Abbreviation	S. andreanum
Ploidy	Diploid (2x), Tetraploid (4x)
Chromosome Number	x=12
Genome Size	760 Mb
Genome Assemblies	1
Cross Reference	NCBI taxon: 315332

Organism Image

Description

Solanum andreanum is a herbaceous perennial plant growing around 6 - 86cm tall. The plant is generally erect, but sometimes forms a rosette. The plant is harvested from the wild for local use as a food.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum andreanum

Solanum andreanum PG3003

S genes

Solanum andreanum PG3003 S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF18	atg0101	3782369	2888313-2889425	Solanum tuberosum DM8.1, SLF18	96.3	F-box domain
SLF19Ψ	atg0101	3782369	2927718-2926604	Solanum tuberosum DM8.1, SLF19	94.9	-
SLF13	atg0123	2182889	845038-843836	Solanum tuberosum DM8.1, SLF13	96.3	F-box domain
SLF12Ψ	atg0123	2182889	1412566-1411399	Solanum pennellii NM_001323464.1, SLF12	93	-
SLF6	atg0123	2182889	1440283-1441425	Solanum tuberosum DM8.1, SLF6-2	95.8	F-box domain
SLF11	atg0360	1100967	438191-439360	Solanum tuberosum DM8.1, SLF11	95.4	F-box domain
SLF9	hptg0005	6705641	1100414-1101556	Solanum tuberosum DM8.1, SLF9	97.7	F-box domain
SLF21	hptg0005	6705641	3308260-3309477	Solanum tuberosum DM8.1, SLF21	96.3	F-box domain
SLF20	hptg0005	6705641	3729754-3730920	Solanum tuberosum DM8.1, SLF20	96.7	F-box domain
SLF7Ψ	hptg0005	6705641	3773624-3774786	Solanum tuberosum DM8.1, SLF7	95	-
SLF5	hptg0005	6705641	3802072-3803238	Solanum tuberosum DM8.1, SLF5-2	97.5	F-box domain
S-RNase	hptg0005	6705641	4405051-4404809, 4404695-4404270	Solanum tuberosum MZ561410.1, SRNase-S7	93.4	Ribonuclease T2 family
SLF12-2	hptg0005	6705641	5289177-5288014	Solanum tuberosum DM8.1, SLF12	95.7	F-box domain
SLF12-3	hptg0005	6705641	5331627-5330467	Solanum tuberosum DM8.1, SLF12	95	F-box domain
SLF5-2	hptg0005	6705641	6554391-6555581	Solanum tuberosum DM8.1, SLF5	95.6	F-box domain
SLF17	hptg0012	2256055	67205-66024	Solanum tuberosum DM8.1, SLF17	98.1	F-box domain
SLF23	hptg0012	2256055	77467-76310	Solanum lycopersicoides KU960925.1, SLF23	95.3	F-box domain
SLF1	hptg0012	2256055	115790-116971	Solanum tuberosum DM8.1, SLF1	91.6	F-box domain
SLF6-2	hptg0022	3096289	10356-11501	Solanum tuberosum DM8.1, SLF6	94.8	F-box domain
SLF22	hptg0022	3096289	476957-475806	Solanum tuberosum DM8.1, SLF22-2	95.8	F-box domain
SLF5-3	hptg0022	3096289	1391517-1390333	Solanum tuberosum DM8.1, SLF5	97.9	F-box domain
SLF12-4	hptg0022	3096289	1431985-1433151	Solanum tuberosum DM8.1, SLF12	98	F-box domain
SLF4Ψ	hptg0022	3096289	1538793-1537648	Solanum peruvianum KJ814848.1, SLF4	94.3	-
SLF5-4	hptg0022	3096289	1732067-1730898	Solanum tuberosum DM8.1, SLF5-2	97.6	F-box domain
SLF7-2	hptg0022	3096289	1760324-1759161	Solanum tuberosum DM8.1, SLF7	95.3	F-box domain
SLF6-3Ψ	hptg0022	3096289	1769312-1768161	Solanum tuberosum DM8.1, SLF6	92.2	-
SLF20-2	hptg0022	3096289	1785579-1784413	Solanum tuberosum DM8.1, SLF20	96.4	F-box domain
SLF21-2	hptg0022	3096289	2196021-2194801	Solanum tuberosum DM8.1, SLF21	96.3	F-box domain
SLF19-2Ψ	ptg0011	47721655	29340112-29341225	Solanum tuberosum DM8.1, SLF19	95.2	-
SLF18-2	ptg0011	47721655	29376308-29375196	Solanum tuberosum DM8.1, SLF18	96.3	F-box domain
SLF13-2	ptg0011	47721655	42827977-42829179	Solanum tuberosum DM8.1, SLF13	96.5	F-box domain
SLF12-5Ψ	ptg0011	47721655	43128947-43127789	Solanum pennellii NM_001323464.1, SLF12	94.1	-
SLF6-4	ptg0011	47721655	43168884-43170008	Solanum tuberosum DM8.1, SLF6-2	94.1	F-box domain
SLF11-2	ptg0011	47721655	44792857-44791688	Solanum tuberosum DM8.1, SLF11	95.8	F-box domain
SLF9-2Ψ	ptg0011	47721655	46466971-46468113	Solanum tuberosum DM8.1, SLF9	97.7	-
SLF15	ptg0014	31259007	1451952-1453211	Solanum tuberosum DM8.1, SLF15	97.6	F-box domain
SLF16Ψ	ptg0014	31259007	2733721-2732541	Solanum tuberosum DM8.1, SLF16	97.8	-
SLF17-2	ptg0014	31259007	30468491-30467310	Solanum tuberosum DM8.1, SLF17	97.8	F-box domain
SLF1-2	ptg0014	31259007	31171293-31172474	Solanum pennellii KJ814858.1, SLF1	92.8	F-box domain

Downloads

The Solanum andreanum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)	S-gene_Solanum_andreanum

Publications

Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.