Description

Nicotiana tomentosiformis is a perennial herbaceous plant. It is a wild species of tobacco native to the Yungas Valley region in the eastern piedmont of the Andes Mountains, primarily in Bolivia.

Recent genetic evidence suggests it is one of the parent species of the common domesticated tobacco (Nicotiana tabacum), which was hybridized along with the species Nicotiana sylvestris, and possibly Nicotiana otophora.

Whole Genomes

Whole Genome Sequences & Annotations for Nicotiana tomentosiformis

• Nicotiana tomentosiformis ASM39032v3

S genes

Nicotiana tomentosiformis ASM39032v3 S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
S-RNase	CM066015.1	159,904,673	133701881-133702108, 133702225-133702653	Nicotiana tomentosiformis XM_018770394.1, ribonuclease S-7-like	100.0	Ribonuclease T2 family
SLF-1	CM066015.1	159,904,673	134961747-134960581	Nicotiana alata EF420254.1, NaDD4-S2	87.2	F-box domain
SLF-2	CM066015.1	159,904,673	135776449-135777618	Nicotiana alata EF420255.1, NaDD5-S2	88.5	F-box domain
SLF-3	CM066015.1	159,904,673	136138588-136137416	Nicotiana alata EF420256.1, NaDD6-S2	91.8	F-box domain
SLF-4	CM066015.1	159,904,673	136827971-136829113	Nicotiana alata EF420253.1, NaDD3-S1	90.0	F-box domain
SLF17	CM066015.1	159,904,673	137577597-137576452	Solanum tuberosum DM8.1, SLF17	80.9	F-box domain

Downloads

The Nicotiana tomentosiformis S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Nicotiana_tomentosiformis

Publications

Sierro N, Auberson M, Dulize R, Ivanov NV. Chromosome-level genome assemblies of Nicotiana tomentosiformis, Nicotiana tomentosiformis, and Nicotiana tomentosiformis. Sci Data. 2024 Jan 26;11(1):135. doi: 10.1038/s41597-024-02965-2.

Sierro N, Battey JN, Ouadi S, Bovet L, Goepfert S, Bakaher N, Peitsch MC, Ivanov NV. Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis. Genome Biol. 2013 Jun 17;14(6):R60. doi: 10.1186/gb-2013-14-6-r60.