| Analysis Name | Capsicum chinense 'Arnaucho (Cultivar)' Arnaucho_INIA Assembly & Annotation |
| Sequencing technology | Illumina HiSeq |
| Assembly method | MaSuRCA v. 3.2.1 |
| Release Date | 2018-11-15 |
No publication. NCBI BioProject PRJNA873099. WGS of landrace Capsicum chinense.
Assembly statistics
| Genome size | 3.1 Gb |
| Number of scaffolds | 7,136 |
| Scaffold N50 | 245.8 Mb |
| Scaffold L50 | 6 |
| Number of contigs | 361,251 |
| Contig N50 | 17.8 kb |
| Contig L50 | 45,637 |
| Assembly level | Scaffold |
The Capsicum chinense 'Arnaucho (Cultivar)' Arnaucho_INIA Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_026120095.1_Arnaucho_INIA_genomic.fna.gz |
The Capsicum chinense 'Arnaucho (Cultivar)' Arnaucho_INIA genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Capsicum chinense 'Arnaucho (Cultivar)' Arnaucho_INIA is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Scaffold | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF13 | JAPEIP010000002.1 | 246720185 | 150294474-150293305 | Solanum tuberosum DM8.1, SLF13 | 84 | F-box domain |
| SLF18 | JAPEIP010000002.1 | 246720185 | 235096629-235095484 | Solanum tuberosum DM8.1, SLF18-2 | 81.9 | F-box domain |
Nucleotide
Protein