| Analysis Name | Anisodus tanguticus 'KB-2021 (Isolate)' ASM3450975v1 Assembly & Annotation |
| Sequencing technology | Illumina NovaSeq; Oxford Nanopore PromethION |
| Assembly method | SMARTdenovo v. Jan-2021, SOAPdenovo v. 1.0 |
| Release Date | 2023-12-26 |
No publication. NCBI BioProject PRJNA1018692. Anisodus tanguticus Genome sequencing and assembly.
Assembly statistics
| Genome size | 1.3 Gb |
| Number of chromosomes | 24 |
| Number of scaffolds | 131 |
| Scaffold N50 | 51.3 Mb |
| Scaffold L50 | 11 |
| Number of contigs | 292 |
| Contig N50 | 25.1 Mb |
| Contig L50 | 20 |
| Assembly level | Chromosome |
The Anisodus tanguticus 'KB-2021 (Isolate)' ASM3450975v1 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_034509755.1_ASM3450975v1_genomic.fna.gz |
The Anisodus tanguticus 'KB-2021 (Isolate)' ASM3450975v1 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
| Genes (GFF3 file) | GCA_034509755.1_ASM3450975v1_genomic.gff.gz |
| CDS sequences (FASTA file) | GCA_034509755.1_ASM3450975v1_cds_from_genomic.fna.gz |
| Protein sequences (FASTA file) | GCA_034509755.1_ASM3450975v1_protein.faa.gz |
Functional annotation for the Anisodus tanguticus 'KB-2021 (Isolate)' ASM3450975v1 is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).
Downloads
| Domain from InterProScan | Anisodus_tanguticus_KB-2021_ASM3450975v1.Pfam.tsv.gz |
Summary
| Query | Chromosome | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF18 | CM067539.1 | 66,055,861 | 35081440-35080310 | Solanum tuberosum DM8.1, SLF18-2 | 82.4 | F-box domain |
| SLF15 | CM067542.1 | 59,883,671 | 4216154-4217392 | Solanum tuberosum DM8.1, SLF15 | 82.6 | F-box domain |
Nucleotide
Protein