| Analysis Name | Anisodus acutangulus 'KIB-2019 (Isolate)' ASM2978341v1 Assembly & Annotation |
| Sequencing technology | Oxford Nanopore PromethION; Hi-C |
| Assembly method | SMARTdenovo v. Jan-2021 |
| Release Date | 2023-04-18 |
No publication. NCBI BioProject PRJNA752913. Anisodus acutangulus Genome sequencing and assembly.
Assembly statistics
| Genome size | 1.3 Gb |
| Number of chromosomes | 24 |
| Number of scaffolds | 62 |
| Scaffold N50 | 53 Mb |
| Scaffold L50 | 11 |
| Number of contigs | 1,884 |
| Contig N50 | 1.4 Mb |
| Contig L50 | 282 |
| Assembly level | Chromosome |
The Anisodus acutangulus 'KIB-2019 (Isolate)' ASM2978341v1 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | Anisodus_acutangulus_ASM2978341v1_genomic.fna.gz |
The Anisodus acutangulus 'KIB-2019 (Isolate)' ASM2978341v1 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
| Genes (GFF3 file) | Anisodus_acutangulus_ASM2978341v1_genomic.gff.gz |
| CDS sequences (FASTA file) | Anisodus_acutangulus_ASM2978341v1_cds_from_genomic.fna.gz |
| Protein sequences (FASTA file) | Anisodus_acutangulus_ASM2978341v1_protein.faa.gz |
Functional annotation for the Anisodus acutangulus 'KIB-2019 (Isolate)' ASM2978341v1 is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).
Downloads
| Domain from InterProScan | Anisodus_acutangulus_ASM2978341v1.Pfam.tsv.gz |
Summary
| Query | Chromosome | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF18 | CM056489.1 | 64,632,408 | 29103496-29104626 | Solanum tuberosum DM8.1, SLF18-2 | 82.5 | F-box domain |
| SLF18-2 | CM056492.1 | 61,319,034 | 22203476-22202358 | Solanum tuberosum DM8.1, SLF18-2 | 82.9 | F-box domain |
Nucleotide
Protein