| Analysis Name | Citrus unshiu CUMW_v1.0 Assembly & Annotation |
| Sequencing technology | Illumina HiSeq; PacBio RS II |
| Assembly method | PLATANUS v. 1.2.2; Opera v.1.3.1; PBJelly v. 14.1.14 |
| Release Date | 2017-12-21 |
NCBI BioProject PRJDB5882. Satsuma mandarin genome sequencing.
Assembly statistics
| Genome size | 359.7 Mb |
| Total ungapped length | 331.5 Mb |
| Number of scaffolds | 20,876 |
| Scaffold N50 | 386.4 kb |
| Scaffold L50 | 203 |
| Number of contigs | 53,636 |
| Contig N50 | 26 kb |
| Contig L50 | 2,930 |
| GC percent | 34 |
| Genome coverage | 144.0x |
| Assembly level | Scaffold |
The Citrus unshiu CUMW_v1.0 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_002897195.1_CUMW_v1.0_genomic.fna.gz |
The Citrus unshiu CUMW_v1.0 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
| Genes (GFF3 file) | GCA_002897195.1_CUMW_v1.0_genomic.gff.gz |
| CDS sequences (FASTA file) | GCA_002897195.1_CUMW_v1.0_cds_from_genomic.fna.gz |
| Protein sequences (FASTA file) | GCA_002897195.1_CUMW_v1.0_protein.faa.gz |
Functional annotation for the Citrus unshiu CUMW_v1.0 is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).
Downloads
| Domain from InterProScan | Citrus_unshiu_CUMW_v1.0.Pfam.tsv.gz |
Citrus S genes Nucleotide
Citrus S genes Protein