Description

Citrus mangshanensis, the mangshanyegan (Chinese: 莽山野柑), is a wild citrus fruit species.

The mangshanyegan is native to mountain forests in Mangshan, Hunan province, China, where it was first reported in the 1980s. It is genetically distinct from the mandarin orange, with which it has morphological similarities, and the term 'Mangshan wild mandarins' as well as the species name C. mangshanensis have been used both for the mangshanyegan and for wild true mandarins of the same region. Genomic sequencing shows the mangshanyegan to be one of a small number of pure (non-hybrid) citrus species, having diverged from other members of the genus at the initial branching of Citrus radiation in the Late Miocene. It is genetically similar to another wild citrus of the region, the yuanju.

Whole Genomes

Whole Genome Sequences & Annotations for Citrus mangshanensis

• Citrus mangshanensis ASM3044989v1

S genes

Citrus mangshanensis ASM3044989v1 S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF13ψ	contig135	520690	46320-45244	ASM2964120v1, SLF13	98.795	-
SLF3	contig135	520690	64230-65339	PB533_SCSK_HAP2, SLF3	96.216	F-box; F_box_assoc
SLF4	contig135	520690	78761-79876	PP719843.1, S30-SLF4	94.176	F-box; F_box_assoc
SLF5	contig135	520690	158103-159227	ASM2964120v1, SLF5	92.851	F-box; F_box_assoc
SLF6	contig135	520690	182860-183999	ASM2964120v1, SLF6	93.634	F-box; F_box_assoc
SLF7	contig135	520690	222200-221073	ASM2964120v1, SLF7	91.851	F-box; F_box_assoc
SLF9	contig135	520690	250132-251271	ASM2964120v1, SLF9	91.373	F-box; F_box_assoc
SLF8	contig135	520690	266274-267413	ASM2964120v1, SLF8-2	93.684	F-box; F_box_assoc
SLF10ψ	contig135	520690	347044-348079	ASM2964120v1, SLF10	92.954	-
SLF11	contig135	520690	364830-363676	ASM2964120v1, SLF11	94.934	F-box; F_box_assoc
SLF12	contig135	520690	374773-373654	ASM2964120v1, SLF12	90.893	F-box; F_box_assoc
SLF13	contig135	520690	390406-391521	ASM2964120v1, SLF13	92.242	F-box; F_box_assoc
SLF2	contig135	520690	400446-399322	PP719841.1, S30-SLF2	96.622	F-box; F_box_assoc
SLF1	contig135	520690	409463-408363	PP719840.1, S30-SLF1	97.366	F-box; F_box_assoc
SLF1-2	contig285	9003745	7859314-7860414	Citrus maxima SLF_S2C	98.547	F-box; F_box_assoc
SLF2-2	contig285	9003745	7870101-7871216	PP719827.1, S2-SLF2	99.104	F-box; F_box_assoc
SLF3-2	contig285	9003745	7892799-7893920	PP719828.1, S2-SLF3	98.841	F-box; F_box_assoc
SLF4-2	contig285	9003745	7904196-7905299	PP719843.1, S30-SLF4	91.561	F-box; F_box_assoc
SLF5-2	contig285	9003745	7921796-7920672	PP719830.1, S2-SLF5	99.2	F-box; F_box_assoc
SLF6-2	contig285	9003745	7961077-7959944	PP719831.1, S2-SLF6	98.942	F-box; F_box_assoc
SLF7-2	contig285	9003745	7966329-7965199	PP719832.1, S2-SLF7	99.293	F-box; F_box_assoc
SLF9-2	contig285	9003745	7975089-7976234	PP719834.1, S2-SLF9	99.302	F-box; F_box_assoc
SLF8-2	contig285	9003745	7980615-7981754	PP719833.1, S2-SLF8	98.509	F-box; F_box_assoc
SLF10-2	contig285	9003745	8002841-8003965	ASM2964120v1, SLF10	99.564	F-box; F_box_assoc
SLF11-2	contig285	9003745	8006447-8005272	ASM2964120v1, SLF11	98.895	F-box; F_box_assoc
SLF12-2	contig285	9003745	8010578-8009457	ASM2964120v1, SLF12	98.93	F-box; F_box_assoc
SLF13-2	contig285	9003745	8021118-8022173	ASM2964120v1, SLF13	99.071	F-box; F_box_assoc
S-RNase-1	contig135	520690	131165-131404, 131508-131945	OQ672689.1, S23-RNase	100	Ribonuclease T2
S-RNase-2	contig285	9003745	7938886-7939140, 7939233-7939676	OQ672700.1, S2-RNase	100	Ribonuclease T2

Downloads

The Citrus mangshanensis S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Citrus_mangshanensis

Publications

Huang Y, He J, Xu Y, Zheng W, Wang S, Chen P, Zeng B, Yang S, Jiang X, Liu Z, Wang L, Wang X, Liu S, Lu Z, Liu Z, Yu H, Yue J, Gao J, Zhou X, Long C, Zeng X, Guo YJ, Zhang WF, Xie Z, Li C, Ma Z, Jiao W, Zhang F, Larkin RM, Krueger RR, Smith MW, Ming R, Deng X, Xu Q. Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. Nat Genet. 2023 Nov;55(11):1964-1975. doi: 10.1038/s41588-023-01516-6.