Description

A clementine (Citrus × clementina) is a tangor, a citrus fruit hybrid between a willowleaf mandarin orange (C. × deliciosa) and a sweet orange (C. × sinensis), named in honor of Clément Rodier, a French missionary who first discovered and propagated the cultivar in Algeria. The exterior is a deep orange colour with a smooth, glossy appearance. Clementines can be separated into 7 to 14 segments. Similar to tangerines, they tend to be easy to peel. They are typically juicy and sweet, with less acid than oranges. Their oils, like other citrus fruits, contain mostly limonene as well as myrcene, linalool, α-pinene and many complex aromatics.

Whole Genomes

Whole Genome Sequences & Annotations for Citrus clementina

• Citrus clementina JGI v1.0

S genes

Citrus S genes Nucleotide

• Citrus maxima F-box protein mRNA, complete cds, S locus S2C protein(F-box protein)
• Citrus reticulata isolate S2-SLF1 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF2 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF3 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF4 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF5 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF6 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF7 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF8 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF9 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF10 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF11 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF12 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF13 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S2-SLF14 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF1 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF2 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF3 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF4 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF5 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF6 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF7 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF8a S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF8b S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF9 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF10 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF11 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF12 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF13 S-locus F-box protein gene, complete cds
• Citrus reticulata isolate S30-SLF14 S-locus F-box protein gene, complete cds
• Citrus maxima S1-ribonuclease mRNA, complete cds
• Citrus maxima S2-ribonuclease mRNA, complete cds
• Citrus maxima S3-ribonuclease mRNA, complete cds
• Citrus maxima S4-ribonuclease mRNA, complete cds
• Citrus maxima S5-ribonuclease mRNA, complete cds
• Citrus maxima S6-ribonuclease mRNA, complete cds
• Citrus maxima S7-ribonuclease mRNA, complete cds
• Citrus maxima S8-ribonuclease mRNA, complete cds
• Citrus maxima S9-ribonuclease mRNA, complete cds
• Citrus reticulata S11-ribonuclease mRNA, complete cds
• Citrus cavaleriei S13-ribonuclease mRNA, complete cds
• Citrus medica S14-ribonuclease mRNA, complete cds
• Citrus sinensis SmR-ribonuclease mRNA, complete cds
• Citrus reticulata S10-ribonuclease mRNA, complete cds
• Citrus hassaku Hassaku HSK19371 S-RNase gene for S17-ribonuclease, complete cds, allele: S17
• Citrus hassaku Hassaku HSK17703 S-RNase gene for S8-ribonuclease, complete cds, allele: S8
• Citrus maxima cultivar shatinyu S-RNase mRNA, complete cds
• Citrus maxima ribonuclease T2 mRNA, complete cds
• Citrus maxima Tosabuntan TBN21745 S-RNase gene for S16-ribonuclease, complete cds, allele: S16
• Citrus maxima Banpeiyu BAN25161 S-RNase gene for S2-ribonuclease, complete cds, allele: S2
• Citrus tamurana Hyuganatsu HY9350 S-RNase gene for S15-ribonuclease, complete cds, allele: S15
• Citrus tamurana Hyuganatsu HY11692 S-RNase gene for S5-ribonuclease, complete cds, allele: S5

Citrus S genes Protein

• F-box protein [Citrus maxima]
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF1"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF2"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF3"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF4"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF5"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF6"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF7"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF8"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF9"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF10"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF11"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF12"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF13"
• S-locus F-box protein [Citrus reticulata], isolate="S2-SLF14"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF1"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF2"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF3"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF4"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF5"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF6"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF7"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF8a"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF8b"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF9"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF10"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF11"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF12"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF13"
• S-locus F-box protein [Citrus reticulata], isolate="S30-SLF14"
• S1-ribonuclease [Citrus maxima]
• S2-ribonuclease [Citrus maxima]
• S3-ribonuclease [Citrus maxima]
• S4-ribonuclease [Citrus maxima]
• S5-ribonuclease [Citrus maxima]
• S6-ribonuclease [Citrus maxima]
• S7-ribonuclease [Citrus maxima]
• S8-ribonuclease [Citrus maxima]
• S9-ribonuclease [Citrus maxima]
• S11-ribonuclease [Citrus reticulata]
• S13-ribonuclease [Citrus cavaleriei]
• S14-ribonuclease [Citrus medica]
• SmR-ribonuclease [Citrus sinensis]
• S10-ribonuclease [Citrus reticulata]
• S17-ribonuclease [Citrus hassaku]
• S8-ribonuclease [Citrus hassaku]
• S-RNase [Citrus maxima]
• ribonuclease T2 [Citrus maxima]
• S16-ribonuclease [Citrus maxima]
• S2-ribonuclease [Citrus maxima]
• S15-ribonuclease [Citrus tamurana]
• S5-ribonuclease [Citrus tamurana]

Downloads

The Citrus S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Citrus

Publications

Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, Cattonaro F, Del Fabbro C, Pinosio S, Zuccolo A, Chapman J, Grimwood J, Tadeo FR, Estornell LH, Muñoz-Sanz JV, Ibanez V, Herrero-Ortega A, Aleza P, Pérez-Pérez J, Ramón D, Brunel D, Luro F, Chen C, Farmerie WG, Desany B, Kodira C, Mohiuddin M, Harkins T, Fredrikson K, Burns P, Lomsadze A, Borodovsky M, Reforgiato G, Freitas-Astúa J, Quetier F, Navarro L, Roose M, Wincker P, Schmutz J, Morgante M, Machado MA, Talon M, Jaillon O, Ollitrault P, Gmitter F, Rokhsar D. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nat Biotechnol. 2014 Jul;32(7):656-62. doi: 10.1038/nbt.2906.