| Analysis Name | Pyrus x bretschneideri Hongxiangsu_v1 Assembly & Annotation |
| Sequencing technology | PacBio Sequel |
| Assembly method | FALCON v. 0.7 |
| Release Date | 2021-07-30 |
NCBI BioProject PRJNA565550. Pyrus x bretschneideri cultivar:Hongxiangsu Genome sequencing.
Assembly statistics
| Genome size | 509.1 Mb |
| Total ungapped length | 509.1 Mb |
| Number of contigs | 452 |
| Contig N50 | 6.1 Mb |
| Contig L50 | 27 |
| GC percent | 37.5 |
| Genome coverage | 130.0x |
| Assembly level | Contig |
The Pyrus x bretschneideri Hongxiangsu_v1 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCF_019419815.1_Pyrus_bretschneideri_v1_genomic.fna.gz |
The Pyrus x bretschneideri Hongxiangsu_v1 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
| Genes (GFF3 file) | GCF_019419815.1_Pyrus_bretschneideri_v1_genomic.gff.gz |
| CDS sequences (FASTA file) | GCF_019419815.1_Pyrus_bretschneideri_v1_rna_from_genomic.fna.gz |
| Protein sequences (FASTA file) | GCF_019419815.1_Pyrus_bretschneideri_v1_protein.faa.gz |
Functional annotation for the Pyrus x bretschneideri Hongxiangsu_v1 is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).
Downloads
| Domain from InterProScan | Pyrus_bretschneideri_Hongxiangsu_v1.Pfam.tsv.gz |
Pyrus S genes Nucleotide
Pyrus S genes Protein