Description

Malus asiatica also known as the Chinese pearleaf crabapple is a species in the genus Malus, in the family Rosaceae. It is native to China and Korea.

Whole Genomes

Whole Genome Sequences & Annotations for Malus asiatica

• Malus asiatica MA

S genes

Malus asiatica MA S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
Loc1-SFBB	CM066507.1	38206339	30050256-30051443	ON918627.1, PbrSFBB.XVI-S17	97.98	F-box; F_box_assoc
Loc2-SFBB	CM066507.1	38206339	30097956-30096772	ON918628.1, PbrSFBB.XVIII-S17	88.65	F-box; F_box_assoc
Loc3-FBX	CM066507.1	38206339	30100297-30101481	AB539854.1, FBX11	99.24	F-box; F_box_assoc
Loc4-SFBB	CM066507.1	38206339	30175616-30174414	ON918620.1, PbrSFBB.IX-S17	97.34	F-box; F_box_assoc
Loc5-FBX	CM066507.1	38206339	30208677-30207499	AB539848.1, MdFBX5-S3	98.22	F-box; F_box_assoc
Loc6-FBX	CM066507.1	38206339	30284502-30285683	AB539860.1, MdFBX17	98.65	F-box; F_box_assoc
Loc7-SFBB	CM066507.1	38206339	30332293-30331121	ON918623.1, PbrSFBB.XII-S17	95.74	F-box; F_box_assoc
S-RNase-1	CM066507.1	38206339	30451867-30451616,30451468-30451034	MG598501.1, S23-RNase	99.7	RNase_T2
Loc8-FBX	CM066507.1	38206339	30611096-30609915	AB539849.1, MdFBX6	91.71	F-box; F_box_assoc
Loc9-FBX	CM066507.1	38206339	30646018-30644816	AB539852.1, MdFBX9-S3	91.81	F-box; F_box_assoc
Loc10-FBX	CM066507.1	38206339	30682348-30681146	XM_008355598.3, MdFBX9	97.84	F-box; F_box_assoc
Loc11-FBX	CM066507.1	38206339	30752427-30751213	XM_008388108.3, MdFBX20	96.38	F-box; F_box_assoc
Loc12-SLFBL	CM066507.1	38206339	30793733-30792549	GU345813.1, SLFBL4	99.92	F-box; F_box_assoc
Loc13-FBX	CM066507.1	38206339	30842510-30841332	XM_029098579.1, FBX1	98.39	F-box; F_box_assoc
Loc14-FBX	CM066507.1	38206339	30934667-30933486	AB539845.1, MdFBX2-S3	97.45	F-box; F_box_assoc
Loc15-FBX	CM066507.1	38206339	31049270-31048038	AB539851.1, MdFBX8-S3	97.73	F-box; F_box_assoc
Loc16-SFBB	CM066507.1	38206339	31069126-31067942	ON918628.1, PbrSFBB.XVIII-S17	98.31	F-box; F_box_assoc
Loc17-FBX	CM066507.1	38206339	31157115-31155925	AB539853.1, FBX10	98.15	F-box; F_box_assoc
Loc18-SLFBL	CM066507.1	38206339	36840455-36841645	GU345807.1, SLFBL11	97.9	F-box; F_box_assoc
Loc19-SFBB	CM066507.1	38206339	36902621-36903805	ON918628.1, PbrSFBB.XVIII-S17	97.81	F-box; F_box_assoc
Loc20-SLFBL	CM066507.1	38206339	37036708-37037886	GU345810.1, SLFBL14	99.75	F-box; F_box_assoc
Loc21-SLFBL	CM066507.1	38206339	37101107-37102285	GU345808.1, SLFBL12	99.75	F-box; F_box_assoc
S-RNase-2	CM066507.1	38206339	37188353-37188595,37188940-37189377	MG598487.1, S1-RNase	100	RNase_T2
Loc22-FBX	CM066507.1	38206339	37255646-37254450	XM_008355598.3, MdFBX9	88.88	F-box; F_box_assoc
Loc23-SFBB	CM066507.1	38206339	37291490-37290315	ON918623.1, PbrSFBB.XII-S17	94.22	F-box; F_box_assoc
Loc24-SFBB	CM066507.1	38206339	37467151-37468335	ON918622.1, PbrSFBB.XI-S17	95.87	F-box; F_box_assoc
Loc25-FBX	CM066507.1	38206339	37536235-37537416	AB539849.1, MdFBX6	96.62	F-box; F_box_assoc
Loc26-SFBB	CM066507.1	38206339	37573528-37572326	ON918613.1, PbrSFBB.I-S17	97.65	F-box; F_box_assoc
Loc27-SFBB	CM066507.1	38206339	37635826-37634612	ON918626.1, PbrSFBB.XV-S17	97.04	F-box; F_box_assoc
Loc28-SLF	CM066507.1	38206339	37771562-37770381	DQ422810.1, SLF1	99.92	F-box; F_box_assoc
Loc29-FBX	CM066507.1	38206339	37801927-37800746	AB539860.1, MdFBX17	99.24	F-box; F_box_assoc
Loc30-SFBB	CM066507.1	38206339	37896269-37897447	HM013900.1, SFBBalpha	98.98	F-box; F_box_assoc
Loc31-SFBB	CM066507.1	38206339	37928045-37929247	ON918620.1, PbrSFBB.IX-S17	97.17	F-box; F_box_assoc
Loc32-FBX	CM066507.1	38206339	38000723-37999539	AB539854.1, FBX11	99.24	F-box; F_box_assoc
Loc33-SFBB	CM066507.1	38206339	38008685-38009869	ON918628.1, PbrSFBB.XVIII-S17	88.07	F-box; F_box_assoc
Loc34-SFBB	CM066507.1	38206339	38040805-38039618	ON918627.1, PbrSFBB.XVI-S17	98.23	F-box; F_box_assoc

Downloads

The Malus asiatica S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Malus_asiatica

Publications

Wang T, Duan S, Xu C, Wang Y, Zhang X, Xu X, Chen L, Han Z, Wu T. Pan-genome analysis of 13 Malus accessions reveals structural and sequence variations associated with fruit traits. Nat Commun. 2023 Nov 15;14(1):7377. doi: 10.1038/s41467-023-43270-7.