Description

Common wheat (Triticum aestivum), also known as bread wheat, is a cultivated wheat species. About 95% of wheat produced worldwide is common wheat; it is the most widely grown of all crops and the cereal with the highest monetary yield.

Whole Genomes

Whole Genome Sequences & Annotations for Triticum aestivum

• Triticum aestivum IWGSC_CS_RefSeq_v2.1

S genes

Triticum aestivum IWGSC_CS_RefSeq_v2.1 S genes

Query	Chromosome	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-S1	NC_057794.1	598660471	84391168-84392763	LpSDUF247-I_chromosome1	79	DUF247
DUF247I-S2	NC_057795.1	700547350	145709610-145711226	LpSDUF247-I_chromosome1	78	DUF247
DUF247I-S3Ψ	NC_057796.1	498638509	89684709-89685896	LpSDUF247-I_chromosome1	73	DUF247
DUF247II-S1	NC_057794.1	598660471	83014913-83016532	LpSDUF247-II_chromosome1	74	DUF247
DUF247II-S2Ψ	NC_057795.1	700547350	145421961-145422617	LrDUF247II-S1	73	DUF247
DUF247II-S3Ψ	NC_057796.1	498638509	89391973-89392746	LpSDUF247-II_chromosome1	67	DUF247
HPS10-S1	NC_057794.1	598660471	84386976-84387099, 84387205-84387338	LpsS_contig12948	38	-
HPS10-S2	NC_057795.1	700547350	145429098-145429201, 145429309-145429435	LpsS_contig11029	65	-
HPS10-S3	NC_057796.1	498638509	89682681-89682768, 89682854-89682987	LpsS_contig11029	57	-
DUF247I-Z1Ψ	NC_057797.1	787782082	743917546-743918082	Pinfirma	82	DUF247
DUF247I-Z2	NC_057798.1	812755788	750154456-750156045	LpZDUF247-I_chromosome2	60	DUF247
DUF247I-Z3Ψ	NC_057799.1	656544405	611391777-611392115	AsativaDUF247I-Z	66	DUF247
DUF247II-Z1Ψ	NC_057797.1	787782082	743921706-743922455	LrDUF247II-Z	62	DUF247
DUF247II-Z2Ψ	NC_057798.1	812755788	750060149-750060499	LrDUF247II-Z	61	DUF247
DUF247II-Z3Ψ	NC_057799.1	656544405	611382800-611382949	AsativaDUF247II-Z1	78	DUF247
HPS10-Z1	NC_057797.1	787782082	743919453-743919597, 743919721-743919830	LpsZ_chromosome2	34	-
HPS10-Z2	NC_057798.1	812755788	750151591-750151723, 750151901-750152004	AerianthaHPS10-Z	61	-
HPS10-Z3	NC_057799.1	656544405	611385099-611385211, 611385286-611385436	LpsZ_chromosome2	58	-

Downloads

The Triticum aestivum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Triticum_aestivum

Publications

International Wheat Genome Sequencing Consortium (IWGSC). A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science. 2014 Jul 18;345(6194):1251788. doi: 10.1126/science.1251788.

International Wheat Genome Sequencing Consortium (IWGSC). Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science. 2018 Aug 17;361(6403):eaar7191. doi: 10.1126/science.aar7191.

Walkowiak S, Gao L, Monat C, Haberer G, Kassa MT, Brinton J, Ramirez-Gonzalez RH, Kolodziej MC, Delorean E, Thambugala D, Klymiuk V, Byrns B, Gundlach H, Bandi V, Siri JN, Nilsen K, Aquino C, Himmelbach A, Copetti D, Ban T, Venturini L, Bevan M, Clavijo B, Koo DH, Ens J, Wiebe K, N'Diaye A, Fritz AK, Gutwin C, Fiebig A, Fosker C, Fu BX, Accinelli GG, Gardner KA, Fradgley N, Gutierrez-Gonzalez J, Halstead-Nussloch G, Hatakeyama M, Koh CS, Deek J, Costamagna AC, Fobert P, Heavens D, Kanamori H, Kawaura K, Kobayashi F, Krasileva K, Kuo T, McKenzie N, Murata K, Nabeka Y, Paape T, Padmarasu S, Percival-Alwyn L, Kagale S, Scholz U, Sese J, Juliana P, Singh R, Shimizu-Inatsugi R, Swarbreck D, Cockram J, Budak H, Tameshige T, Tanaka T, Tsuji H, Wright J, Wu J, Steuernagel B, Small I, Cloutier S, Keeble-Gagnère G, Muehlbauer G, Tibbets J, Nasuda S, Melonek J, Hucl PJ, Sharpe AG, Clark M, Legg E, Bharti A, Langridge P, Hall A, Uauy C, Mascher M, Krattinger SG, Handa H, Shimizu KK, Distelfeld A, Chalmers K, Keller B, Mayer KFX, Poland J, Stein N, McCartney CA, Spannagl M, Wicker T, Pozniak CJ. Multiple wheat genomes reveal global variation in modern breeding. Nature. 2020 Dec;588(7837):277-283. doi: 10.1038/s41586-020-2961-x.

Zhu T, Wang L, Rimbert H, Rodriguez JC, Deal KR, De Oliveira R, Choulet F, Keeble-Gagnère G, Tibbits J, Rogers J, Eversole K, Appels R, Gu YQ, Mascher M, Dvorak J, Luo MC. Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly. Plant J. 2021 Jul;107(1):303-314. doi: 10.1111/tpj.15289.