Thinopyrum elongatum SDAU-1.0 Assembly & Annotation

Overview

Analysis Name Thinopyrum elongatum SDAU-1.0 Assembly & Annotation
Sequencing technology Illumina HiSeq, Illumina HiSeq, HiSeqX, PacBio
Assembly method DeNovoMAGIC3.0 DeNovoMAGIC3.0
Release Date 2020-03-10
Reference Publication(s)

Wang H, Sun S, Ge W, Zhao L, Hou B, Wang K, Lyu Z, Chen L, Xu S, Guo J, Li M, Su P, Li X, Wang G, Bo C, Fang X, Zhuang W, Cheng X, Wu J, Dong L, Chen W, Li W, Xiao G, Zhao J, Hao Y, Xu Y, Gao Y, Liu W, Liu Y, Yin H, Li J, Li X, Zhao Y, Wang X, Ni F, Ma X, Li A, Xu SS, Bai G, Nevo E, Gao C, Ohm H, Kong L. Horizontal gene transfer of Fhb7 from fungus underlies Fusarium head blight resistance in wheat. Science. 2020 May 22;368(6493):eaba5435. doi: 10.1126/science.aba5435.

Abstract

Fusarium head blight (FHB), a fungal disease caused by Fusarium species that produce food toxins, currently devastates wheat production worldwide, yet few resistance resources have been discovered in wheat germplasm. Here, we cloned the FHB resistance gene Fhb7 by assembling the genome of Thinopyrum elongatum, a species used in wheat distant hybridization breeding. Fhb7 encodes a glutathione S-transferase (GST) and confers broad resistance to Fusarium species by detoxifying trichothecenes through de-epoxidation. Fhb7 GST homologs are absent in plants, and our evidence supports that Th. elongatum has gained Fhb7 through horizontal gene transfer (HGT) from an endophytic Epichloë species. Fhb7 introgressions in wheat confers resistance to both FHB and crown rot in diverse wheat backgrounds without yield penalty, providing a solution for Fusarium resistance breeding.

Assembly statistics

Genome size (bp)4,634,136,514
GC content45.87%
Genome sequence No.646
Maximum genome sequence length (bp)744,096,988
Minimum genome sequence length (bp)858
Average genome sequence length (bp)7,173,586
Genome sequence N50 (bp)625,473,173
Genome sequence N90 (bp)553,355,525
Assembly levelChromosome

Assembly

The Thinopyrum elongatum SDAU-1.0 Assembly file is available in FASTA format.

Downloads

Chromosomes (FASTA file) c.genome.fasta.gz

Gene Predictions

The Thinopyrum elongatum SDAU-1.0 genome gene prediction files are available in GFF3 and FASTA format.

Downloads

Genes (GFF3 file) GWHABKY00000000.gff.gz
CDS sequences (FASTA file) GWHABKY00000000.RNA.fasta.gz
Protein sequences (FASTA file) GWHABKY00000000.Protein.faa.gz

Functional Analysis

Functional annotation for the Thinopyrum elongatum SDAU-1.0 is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).

Downloads

Domain from InterProScan Thinopyrum_elongatum.Pfam.tsv.gz

S genes

Summary

QueryChromosomeSize(bp)CoordinatestBLASTn HittBLASTn %IDDomain
DUF247I-SΨGWHABKY00000001553355525115515241-115515528LpSDUF247-I_chromosome181DUF247
DUF247II-SΨGWHABKY00000001553355525115494649-115495683LpSDUF247-II_chromosome171DUF247
HPS10-SGWHABKY00000001553355525115512273-115512409,
115512525-115512648
LpsS_contig1294854-
DUF247I-ZΨGWHABKY00000002740519526659016504-659017211AsativaDUF247I-Z73DUF247
DUF247II-ZGWHABKY00000002740519526658804856-658806496AsativaDUF247II-Z177DUF247
HPS10-ZGWHABKY00000002740519526658806736-658806824,
658806930-658807089
Amyosuroides50-

Nucleotide

Protein

© 2023 National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences