Analysis Name | Thinopyrum elongatum SDAU-1.0 Assembly & Annotation |
Sequencing technology | Illumina HiSeq, Illumina HiSeq, HiSeqX, PacBio |
Assembly method | DeNovoMAGIC3.0 DeNovoMAGIC3.0 |
Release Date | 2020-03-10 |
Wang H, Sun S, Ge W, Zhao L, Hou B, Wang K, Lyu Z, Chen L, Xu S, Guo J, Li M, Su P, Li X, Wang G, Bo C, Fang X, Zhuang W, Cheng X, Wu J, Dong L, Chen W, Li W, Xiao G, Zhao J, Hao Y, Xu Y, Gao Y, Liu W, Liu Y, Yin H, Li J, Li X, Zhao Y, Wang X, Ni F, Ma X, Li A, Xu SS, Bai G, Nevo E, Gao C, Ohm H, Kong L. Horizontal gene transfer of Fhb7 from fungus underlies Fusarium head blight resistance in wheat. Science. 2020 May 22;368(6493):eaba5435. doi: 10.1126/science.aba5435.
AbstractFusarium head blight (FHB), a fungal disease caused by Fusarium species that produce food toxins, currently devastates wheat production worldwide, yet few resistance resources have been discovered in wheat germplasm. Here, we cloned the FHB resistance gene Fhb7 by assembling the genome of Thinopyrum elongatum, a species used in wheat distant hybridization breeding. Fhb7 encodes a glutathione S-transferase (GST) and confers broad resistance to Fusarium species by detoxifying trichothecenes through de-epoxidation. Fhb7 GST homologs are absent in plants, and our evidence supports that Th. elongatum has gained Fhb7 through horizontal gene transfer (HGT) from an endophytic Epichloë species. Fhb7 introgressions in wheat confers resistance to both FHB and crown rot in diverse wheat backgrounds without yield penalty, providing a solution for Fusarium resistance breeding.
Assembly statistics
Genome size (bp) | 4,634,136,514 |
GC content | 45.87% |
Genome sequence No. | 646 |
Maximum genome sequence length (bp) | 744,096,988 |
Minimum genome sequence length (bp) | 858 |
Average genome sequence length (bp) | 7,173,586 |
Genome sequence N50 (bp) | 625,473,173 |
Genome sequence N90 (bp) | 553,355,525 |
Assembly level | Chromosome |
The Thinopyrum elongatum SDAU-1.0 Assembly file is available in FASTA format.
Downloads
Chromosomes (FASTA file) | c.genome.fasta.gz |
The Thinopyrum elongatum SDAU-1.0 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
Genes (GFF3 file) | GWHABKY00000000.gff.gz |
CDS sequences (FASTA file) | GWHABKY00000000.RNA.fasta.gz |
Protein sequences (FASTA file) | GWHABKY00000000.Protein.faa.gz |
Functional annotation for the Thinopyrum elongatum SDAU-1.0 is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).
Downloads
Domain from InterProScan | Thinopyrum_elongatum.Pfam.tsv.gz |
Summary
Query | Chromosome | Size(bp) | Coordinates | tBLASTn Hit | tBLASTn %ID | Domain |
DUF247I-SΨ | GWHABKY00000001 | 553355525 | 115515241-115515528 | LpSDUF247-I_chromosome1 | 81 | DUF247 |
DUF247II-SΨ | GWHABKY00000001 | 553355525 | 115494649-115495683 | LpSDUF247-II_chromosome1 | 71 | DUF247 |
HPS10-S | GWHABKY00000001 | 553355525 | 115512273-115512409,115512525-115512648 | LpsS_contig12948 | 54 | - |
DUF247I-ZΨ | GWHABKY00000002 | 740519526 | 659016504-659017211 | AsativaDUF247I-Z | 73 | DUF247 |
DUF247II-Z | GWHABKY00000002 | 740519526 | 658804856-658806496 | AsativaDUF247II-Z1 | 77 | DUF247 |
HPS10-Z | GWHABKY00000002 | 740519526 | 658806736-658806824,658806930-658807089 | Amyosuroides | 50 | - |
Nucleotide
Protein