Description

Rye (Secale cereale) is a grass grown extensively as a grain, a cover crop and a forage crop. It is grown principally in an area from eastern and northern Europe into Russia. It is much more tolerant of cold weather and poor soil than other cereals, making it useful in those regions; its vigorous growth suppresses weeds, and provides abundant forage for animals early in the year. It is a member of the wheat tribe (Triticeae) which includes the cereals wheat and barley. Rye grain is used for bread, beer, rye whiskey, and animal fodder. In Scandinavia, rye was a staple food in the Middle-ages, and rye crispbread remains a popular food in the region. Around half of world production is in Europe; relatively little is traded between countries. A wheat-rye hybrid, triticale, combines the qualities of the two parent crops and is produced in large quantities worldwide. In European folklore, the Roggenwolf ("rye wolf") is a carnivorous corn demon or Feldgeist.

Whole Genomes

Whole Genome Sequences & Annotations for Secale cereale

• Secale cereale Rye_Lo7_2018_v1p1p1

S genes

Secale cereale Rye_Lo7_2018_v1p1p1 S genes

Query	?	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-S	1R	727344967	112035396-112036991	LpSDUF247-I_chromosome1	79	DUF247
DUF247II-S	1R	727344967	111162492-111164135	LpSDUF247-II_chromosome1	73	DUF247
HPS10-S	1R	727344967	112033370-112033490, 112033588-112033724	LpsS_contig11029	47	-
DUF247II-Z	2R	946003158	878409899-878411533	AsativaDUF247II-Z1	79	DUF247
HPS10-Z	2R	946003158	878498719-878498828, 878498941-878499085	LmsZ_scaffold1905	55	-

Downloads

The Secale cereale S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Secale_cereale

Publications

Rabanus-Wallace MT, Hackauf B, Mascher M, Lux T, Wicker T, Gundlach H, Baez M, Houben A, Mayer KFX, Guo L, Poland J, Pozniak CJ, Walkowiak S, Melonek J, Praz CR, Schreiber M, Budak H, Heuberger M, Steuernagel B, Wulff B, Börner A, Byrns B, Čížková J, Fowler DB, Fritz A, Himmelbach A, Kaithakottil G, Keilwagen J, Keller B, Konkin D, Larsen J, Li Q, Myśków B, Padmarasu S, Rawat N, Sesiz U, Biyiklioglu-Kaya S, Sharpe A, Šimková H, Small I, Swarbreck D, Toegelová H, Tsvetkova N, Voylokov AV, Vrána J, Bauer E, Bolibok-Bragoszewska H, Doležel J, Hall A, Jia J, Korzun V, Laroche A, Ma XF, Ordon F, Özkan H, Rakoczy-Trojanowska M, Scholz U, Schulman AH, Siekmann D, Stojałowski S, Tiwari VK, Spannagl M, Stein N. Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nat Genet. 2021 Apr;53(4):564-573. doi: 10.1038/s41588-021-00807-0.