Description

Paspalum vaginatum is a species of grass known by many names, including seashore paspalum, biscuit grass, saltwater couch, silt grass, and swamp couch. It is native to the Americas, where it grows in tropical and subtropical regions. It is found throughout the other tropical areas of the world, where it is an introduced species and sometimes an invasive weed. It is also cultivated as a turfgrass in many places.

Whole Genomes

Whole Genome Sequences & Annotations for Paspalum vaginatum

• Paspalum vaginatum v3.1

S genes

Paspalum vaginatum v3.1 S genes

Query	Chromosome	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-S	CM048814.1	42926309	3511880-3513511	LpSDUF247-I_chromosome1	51	DUF247
DUF247II-S	CM048814.1	42926309	3437252-3438865	Aatlantica_DUF247II-S	42	DUF247
HPS10-S	CM048814.1	42926309	3446593-3446705, 3446849-3447029	Omeridionalis	34	-
DUF247I-Z1	CM048813.1	42929029	39502022-39503620	LpZDUF247-I_chromosome2	72	DUF247
DUF247I-Z2	CM048813.1	42929029	40018750-40020354	LpZDUF247-I_chromosome2	70	DUF247
DUF247II-Z1	CM048813.1	42929029	39519601-39521268	LpZDUF247-II_chromosome2	66	DUF247
DUF247II-Z2	CM048813.1	42929029	40036135-40037802	LpZDUF247-II_chromosome2	66	DUF247
HPS10-Z1	CM048813.1	42929029	39511186-39511330, 39511402-39511526	LpsZ_chromosome2	68	-
HPS10-Z2	CM048813.1	42929029	40023551-40023689, 40023773-40023882	LpsZ_chromosome2	52	-

Downloads

The Paspalum vaginatum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Paspalum_vaginatum

Publications

Sun G, Wase N, Shu S, Jenkins J, Zhou B, Torres-Rodríguez JV, Chen C, Sandor L, Plott C, Yoshinga Y, Daum C, Qi P, Barry K, Lipzen A, Berry L, Pedersen C, Gottilla T, Foltz A, Yu H, O'Malley R, Zhang C, Devos KM, Sigmon B, Yu B, Obata T, Schmutz J, Schnable JC. Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nat Commun. 2022 Dec 13;13(1):7731. doi: 10.1038/s41467-022-35507-8.