Description

Oryza nivara is a species of monocot in the family Poaceae (grass family).

Whole Genomes

Whole Genome Sequences & Annotations for Oryza nivara

• Oryza nivara OnivRS2

S genes

Oryza nivara OnivRS2 S genes

Query	Chromosome	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-SΨ	CM002507.2	31081614	6069393-6069542	Olongistaminata	82	DUF247
DUF247II-S	CM002507.2	31081614	6053563-6055218	LpSDUF247-II_chromosome1	68	DUF247
HPS10-S	CM002507.2	31081614	6057134-6057236, 6057339-6057475	LpsS_contig11029	38	-
DUF247I-ZΨ	CM002506.2	34895103	32183822-32184175	Olongistaminata	62	DUF247
DUF247II-Z	CM002506.2	34895103	32194703-32196319	Olongistaminata	60	DUF247
HPS10-Z	CM002506.2	34895103	32193154-32193251, 32193382-32193502	Osativa	95	-

Downloads

The Oryza nivara S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Oryza_nivara

Publications

Zhang QJ, Zhu T, Xia EH, Shi C, Liu YL, Zhang Y, Liu Y, Jiang WK, Zhao YJ, Mao SY, Zhang LP, Huang H, Jiao JY, Xu PZ, Yao QY, Zeng FC, Yang LL, Gao J, Tao DY, Wang YJ, Bennetzen JL, Gao LZ. Rapid diversification of five Oryza AA genomes associated with rice adaptation. Proc Natl Acad Sci U S A. 2014 Nov 18;111(46):E4954-62. doi: 10.1073/pnas.1418307111.

Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, Rosa Farias DD, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nat Genet. 2018 Feb;50(2):285-296. doi: 10.1038/s41588-018-0040-0.