Description

South American AA species O. glumaepatula is the sister group only of African O. barthii and O. glaberrima.

Whole Genomes

Whole Genome Sequences & Annotations for Oryza glumaepatula

• Oryza glumaepatula OgluRS3

S genes

Oryza glumaepatula OgluRS3 S genes

Query	Chromosome	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-SΨ	CM002519.2	30257704	5446624-5446773	LpSDUF247-I_chromosome1	67	DUF247
DUF247II-SΨ	CM002519.2	30257704	5434216-5435142	LpSDUF247-II_chromosome1	68	DUF247
HPS10-S	CM002519.2	30257704	5437812-5437914, 5438017-5438153	LpsS_contig11029	38	-
DUF247I-ZΨ	CM002518.2	34316930	31627791-31628144	Olongistaminata	62	DUF247

Downloads

The Oryza glumaepatula S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Oryza_glumaepatula

Publications

Zhang QJ, Zhu T, Xia EH, Shi C, Liu YL, Zhang Y, Liu Y, Jiang WK, Zhao YJ, Mao SY, Zhang LP, Huang H, Jiao JY, Xu PZ, Yao QY, Zeng FC, Yang LL, Gao J, Tao DY, Wang YJ, Bennetzen JL, Gao LZ. Rapid diversification of five Oryza AA genomes associated with rice adaptation. Proc Natl Acad Sci U S A. 2014 Nov 18;111(46):E4954-62. doi: 10.1073/pnas.1418307111.

Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, Rosa Farias DD, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nat Genet. 2018 Feb;50(2):285-296. doi: 10.1038/s41588-018-0040-0.