Description

Oryza eichingeri (syns. Oryza collina and Oryza rhizomatis) is a species of wild rice in the family Poaceae, with a disjunct distribution in Ivory Coast, Republic of the Congo, Democratic Republic of the Congo, Uganda, Kenya, Tanzania, and Sri Lanka.[1][2] It is being studied as a source of genes for resistance to the brown planthopper (Nilaparvata lugens), an important pest of cultivated rice (Oryza sativa).

Whole Genomes

Whole Genome Sequences & Annotations for Oryza eichingeri

• Oryza eichingeri v1

S genes

Oryza eichingeri v1 S genes

Query	Scaffold	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-SΨ	scaffold471	128206	95774-96085	Olongistaminata	77	DUF247
DUF247II-SΨ	scaffold471	128206	81243-82409	Olongistaminata	63	DUF247
HPS10-S	scaffold471	128206	84440-84542, 84668-84798	LmsS_scaffold818	37	-
DUF247I-ZΨ	scaffold8487	15862	9817-10779	Dglomerata	61	DUF247
DUF247II-ZΨ	scaffold730	109338	12512-12733	TturgidumZ2	63	DUF247

Downloads

The Oryza eichingeri S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Oryza_eichingeri

Publications

Shenton M, Kobayashi M, Terashima S, Ohyanagi H, Copetti D, Hernández-Hernández T, Zhang J, Ohmido N, Fujita M, Toyoda A, Ikawa H, Fujiyama A, Furuumi H, Miyabayashi T, Kubo T, Kudrna D, Wing R, Yano K, Nonomura KI, Sato Y, Kurata N. Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels. Genome Biol Evol. 2020 Apr 1;12(4):413-428. doi: 10.1093/gbe/evaa037.