Oryza brachyantha
Overview
| Genus | Oryza |
| Species | brachyantha |
| Common Name | Wild rice (FF-genome) |
| Abbreviation | O. brachyantha |
| Ploidy | Diploid |
| Chromosome Number | 2n=2x=24 |
| Genome Size | 300 Mb |
| Genome Assemblies | 2 |
| Cross Reference | NCBI taxon: 4533 |
Organism Image
Description
Oryza brachyantha is a grass in the rice genus Oryza, distantly related to cultivated rice O. sativa, and native to tropical Africa. It is an annual grass that grows as a tuft.
S genes
Oryza brachyantha ObraRS2 S genes
| Query | Chromosome | Size(bp) | Coordinates | tBLASTn Hit | tBLASTn %ID | Domain |
| DUF247I-S | CM001245.3 | 20245399 | 4115235-4116713 | LpSDUF247-I_chromosome1 | 65 | DUF247 |
| DUF247II-SΨ | CM001245.3 | 20245399 | 4100488-4100544 | LrDUF247II-S1 | 71 | DUF247 |
| HPS10-S | CM001245.3 | 20245399 | 4112118-4112121,4112376-4112485 | LpsS_contig11029 | 57 | - |
| DUF247I-Z | CM001244.3 | 21827379 | 19618479-19620095 | LpZDUF247-I_chromosome2 | 62 | DUF247 |
| DUF247II-ZΨ | CM001244.3 | 21827379 | 19628363-19628941 | AsativaDUF247II-Z1 | 66 | DUF247 |
| HPS10-Z | CM001244.3 | 21827379 | 19625322-19625457,19625571-19625680 | LpsZ_chromosome2 | 70 | - |
Downloads
The Oryza brachyantha S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Oryza_brachyantha |
Publications
Chen J, Huang Q, Gao D, Wang J, Lang Y, Liu T, Li B, Bai Z, Luis Goicoechea J, Liang C, Chen C, Zhang W, Sun S, Liao Y, Zhang X, Yang L, Song C, Wang M, Shi J, Liu G, Liu J, Zhou H, Zhou W, Yu Q, An N, Chen Y, Cai Q, Wang B, Liu B, Min J, Huang Y, Wu H, Li Z, Zhang Y, Yin Y, Song W, Jiang J, Jackson SA, Wing RA, Wang J, Chen M. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nat Commun. 2013;4:1595. doi: 10.1038/ncomms2596.