Oropetium thomaeum
Overview
| Genus | Oropetium |
| Species | thomaeum |
| Common Name | - |
| Abbreviation | O. thomaeum |
| Ploidy | Diploid |
| Chromosome Number | 2n=2x=20 |
| Genome Size | 250 Mb |
| Genome Assemblies | 1 |
| Cross Reference | NCBI taxon: 1148796 |
Organism Image
Description
The native range of this species is NE. & E. Tropical Africa, Indian Subcontinent to Indo-China. It is a perennial or annual.
S genes
Oropetium thomaeum V2 S genes
| Query | ? | Size(bp) | Coordinates | tBLASTn Hit | tBLASTn %ID | Domain |
| DUF247II-SΨ | 2 | 31289883 | 13312260-13313252 | Shybrid | 59 | DUF247 |
| HPS10-S | 2 | 31289883 | 13336971-13337044,13337440-13337542 | ShybridS1 | 72 | - |
| DUF247I-ZΨ | 6 | 20568207 | 19269559-19270131 | Pvaginatum | 80 | DUF247 |
| DUF247II-ZΨ | 6 | 20568207 | 19265373-19265732 | Ttriandra | 61 | DUF247 |
| HPS10-Z | 6 | 20568207 | 19267731-19267840,19268031-19268136 | Lperrieri | 65 | - |
Downloads
The Oropetium thomaeum S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Oropetium_thomaeum |
Publications
VanBuren R, Bryant D, Edger PP, Tang H, Burgess D, Challabathula D, Spittle K, Hall R, Gu J, Lyons E, Freeling M, Bartels D, Ten Hallers B, Hastie A, Michael TP, Mockler TC. Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum. Nature. 2015 Nov 26;527(7579):508-11. doi: 10.1038/nature15714.
VanBuren R, Wai CM, Keilwagen J, Pardo J. A chromosome-scale assembly of the model desiccation tolerant grass Oropetium thomaeum. Plant Direct. 2018 Nov 15;2(11):e00096. doi: 10.1002/pld3.96.