Microstegium vimineum
Overview
| Genus | Microstegium |
| Species | vimineum |
| Common Name | Japanese stiltgrass |
| Abbreviation | M. vimineum |
| Ploidy | Polyploidy |
| Chromosome Number | - |
| Genome Size | 1300 Mb |
| Genome Assemblies | 1 |
| Cross Reference | NCBI taxon: 91518 |
Organism Image
Description
Microstegium vimineum, commonly known as Japanese stiltgrass, packing grass, or Nepalese browntop, is an annual grass that is common in a wide variety of habitats and is well adapted to low light levels. It has become an invasive species throughout parts of the world, most notably North America.
Whole Genomes
Whole Genome Sequences & Annotations for Microstegium vimineum
S genes
Microstegium vimineum ASM2203655v1 S genes
| Query | Chromosome | Size(bp) | Coordinates | tBLASTn Hit | tBLASTn %ID | Domain |
| DUF247I-SΨ | CM039126.1 | 53487048 | 24937586-24938389 | Shybrid | 68 | DUF247 |
| DUF247I-ZΨ | CM039126.1 | 53487048 | 58858911-58860038 | Pvaginatum | 81 | DUF247 |
| DUF247II-Z1 | CM039131.1 | 62378202 | 59130582-59132177 | Shybrid | 54 | DUF247 |
| DUF247II-Z2Ψ | CM039131.1 | 62378202 | 59255517-59256944 | Pvaginatum | 85 | DUF247 |
| HPS10-Z | CM039131.1 | 62378202 | 59129639-59129798,59129965-59130074 | Ocoarctata | 35 | - |
Downloads
The Microstegium vimineum S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Microstegium_vimineum |
Publications
Ramachandran D, Huebner CD, Daly M, Haimovitz J, Swale T, Barrett CF. Chromosome Level Genome Assembly and Annotation of Highly Invasive Japanese Stiltgrass (Microstegium vimineum). Genome Biol Evol. 2021 Nov 5;13(11):evab238. doi: 10.1093/gbe/evab238.