Description

Echinochloa oryzoides is a species of grass known by the common name early barnyard grass. Its origin is not certain but it may be Eurasia. The grass has been identified as a major weed of rice paddies and has been known to mimic rice.

Whole Genomes

Whole Genome Sequences & Annotations for Echinochloa oryzoides

• Echinochloa oryzoides eo_v2

S genes

Echinochloa oryzoides eo_v2 S genes

Query	Chromosome	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-SΨ	GWHBDNS00000001	71835555	27088784-27089425	Shybrid	67	DUF247
DUF247II-SΨ	GWHBDNS00000015	40763703	23387974-23389281	Shybrid	51	DUF247
DUF247I-Z1Ψ	GWHBDNS00000009	43953986	40089215-40090663	Pvaginatum	52	DUF247
DUF247I-Z2Ψ	GWHBDNS00000018	37476609	31649624-31649902	Pvaginatum	59	DUF247
DUF247II-Z1Ψ	GWHBDNS00000009	43953986	40093475-40094587	Sspontaneum	47	DUF247
DUF247II-Z2	GWHBDNS00000018	37476609	31643713-31645346	Sspontaneum	55	DUF247
HPS10-Z1	GWHBDNS00000009	43953986	40091381-40091564, 40091658-40091752	TaestivumZ1	66	-
HPS10-Z2	GWHBDNS00000018	37476609	31645847-31645953, 31646034-31646190	Sviridis	62	-

Downloads

The Echinochloa oryzoides S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Echinochloa_oryzoides

Publications

Wu D, Shen E, Jiang B, Feng Y, Tang W, Lao S, Jia L, Lin HY, Xie L, Weng X, Dong C, Qian Q, Lin F, Xu H, Lu H, Cutti L, Chen H, Deng S, Guo L, Chuah TS, Song BK, Scarabel L, Qiu J, Zhu QH, Yu Q, Timko MP, Yamaguchi H, Merotto A Jr, Qiu Y, Olsen KM, Fan L, Ye CY. Genomic insights into the evolution of Echinochloa species as weed and orphan crop. Nat Commun. 2022 Feb 3;13(1):689. doi: 10.1038/s41467-022-28359-9.

Ye CY, Wu D, Mao L, Jia L, Qiu J, Lao S, Chen M, Jiang B, Tang W, Peng Q, Pan L, Wang L, Feng X, Guo L, Zhang C, Kellogg EA, Olsen KM, Bai L, Fan L. The Genomes of the Allohexaploid Echinochloa oryzoides and Its Progenitors Provide Insights into Polyploidization-Driven Adaptation. Mol Plant. 2020 Sep 7;13(9):1298-1310. doi: 10.1016/j.molp.2020.07.001.