| Genus | Echinochloa |
| Species | haploclada |
| Common Name | - |
| Abbreviation | E. haploclada |
| Ploidy | Diploid |
| Chromosome Number | 2n=2x=18 |
| Genome Size | 420 Mb |
| Genome Assemblies | 1 |
| Cross Reference | NCBI taxon: 502763 |
Echinochloa haploclada is a species of monocot in the family Poaceae (grass family).
Whole Genome Sequences & Annotations for Echinochloa haploclada
Echinochloa haploclada Pasquet_1083 S genes
| Query | Chromosome | Size(bp) | Coordinates | tBLASTn Hit | tBLASTn %ID | Domain |
| DUF247I-S1 | eh_chr6 | 38164122 | 18011630-18013324 | Sspontaneum | 65 | DUF247 |
| DUF247I-S2 | eh_chr6 | 38164122 | 18732417-18733958 | Sspontaneum | 68 | DUF247 |
| DUF247II-S1 | eh_chr6 | 38164122 | 18815333-18816970 | Shybrid | 66 | DUF247 |
| DUF247II-S2 | eh_chr6 | 38164122 | 19525042-19526655 | Shybrid | 66 | DUF247 |
| HPS10-S1 | eh_chr6 | 38164122 | 19445475-19445595,19445719-19445831 | SspontaneumS1 | 32 | - |
| HPS10-S2 | eh_chr6 | 38164122 | 18598645-18598807,18598909-18599018 | SspontaneumS1 | 62 | - |
| DUF247I-Z | eh_chr9 | 37954838 | 35079473-35081098 | Shybrid | 63 | DUF247 |
| DUF247II-Z | eh_chr9 | 37954838 | 35088869-35090569 | Sspontaneum | 55 | DUF247 |
| HPS10-Z | eh_chr9 | 37954838 | 3509193-3509346,3509442-3509551 | ShybridZ5 | 58 | - |
The Echinochloa haploclada S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Echinochloa_haploclada |
Ye CY, Wu D, Mao L, Jia L, Qiu J, Lao S, Chen M, Jiang B, Tang W, Peng Q, Pan L, Wang L, Feng X, Guo L, Zhang C, Kellogg EA, Olsen KM, Bai L, Fan L. The Genomes of the Allohexaploid Echinochloa haploclada and Its Progenitors Provide Insights into Polyploidization-Driven Adaptation. Mol Plant. 2020 Sep 7;13(9):1298-1310. doi: 10.1016/j.molp.2020.07.001.