Coix lacryma-jobi

Overview

Genus Coix
Species lacryma-jobi
Common Name Soft-shelled adlay
Abbreviation C. lacryma-jobi
Ploidy Diploid
Chromosome Number 2n=2x=20
Genome Size 1560 Mb
Genome Assemblies 3
Cross Reference NCBI taxon: 4505

Organism Image

Description

Job's tears /dʒoʊbz/ (Coix lacryma-jobi), also known as adlay or adlay millet, is a tall grain-bearing perennial tropical plant of the family Poaceae (grass family). It is native to Southeast Asia and introduced to Northern China and India in remote antiquity, and elsewhere cultivated in gardens as an annual. It has been naturalized in the southern United States and the New World tropics. In its native environment it is grown at higher elevation areas where rice and corn do not grow well. Job's tears are also commonly sold as Chinese pearl barley, though true barley belongs to a completely different genus.

There are two main varieties of the species, one wild and one cultivated. The wild variety, Coix lacryma-jobi var. lacryma-jobi, has hard-shelled pseudocarps—very hard, pearly white, oval structures used as beads for making prayer beads or rosaries, necklaces, and other objects. The cultivated variety Coix lacryma-jobi var. ma-yuen is harvested as a cereal crop, has a soft shell, and is used medicinally in parts of Asia.

Whole Genomes

Whole Genome Sequences & Annotations for Coix lacryma-jobi

S genes

Coix lacryma-jobi BJ Coix v1 S genes

QueryChromosomeSize(bp)CoordinatestBLASTn HittBLASTn %IDDomain
DUF247I-SΨGWHAAYR00000003179537263106822829-106823872Ecrus-galli59DUF247
DUF247II-SΨGWHAAYR0000000317953726399645733-99646311Shybrid93DUF247
HPS10-SGWHAAYR00000003179537263105666312-105666427,
105666525-105666687
Pvirgatum61-

Downloads

The Coix lacryma-jobi S gene sequences are available in FASTA format.

CDS and Protein (FASTA file) S-gene_Coix_lacryma-jobi

Publications

Kang SH, Kim B, Choi BS, Lee HO, Kim NH, Lee SJ, Kim HS, Shin MJ, Kim HW, Nam K, Kang KD, Kwon SJ, Oh TJ, Lee SC, Kim CK. Genome Assembly and Annotation of Soft-Shelled Adlay (Coix lacryma-jobi Variety ma-yuen), a Cereal and Medicinal Crop in the Poaceae Family. Front Plant Sci. 2020 May 18;11:630. doi: 10.3389/fpls.2020.00630.

Hua Y, Liu Q, Zhai Y, Zhao L, Zhu J, Zhang X, Jia Q, Liang Z, Wang D. Genome-wide analysis of the HSP20 gene family and its response to heat and drought stress in Coix (Coix lacryma-jobi L.). BMC Genomics. 2023 Aug 24;24(1):478. doi: 10.1186/s12864-023-09580-2.

© 2023 National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences