Description

Alopecurus myosuroides is an annual grass, native to Eurasia, found in moist meadows, deciduous forests, and on cultivated and waste land. It is also known as slender meadow foxtail, black-grass, twitch grass, and black twitch.

Whole Genomes

Whole Genome Sequences & Annotations for Alopecurus myosuroides

• Alopecurus myosuroides DE01087

S genes

Alopecurus myosuroides DE01087 S genes

Query	Scaffold	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-S1	Chr5	404789636	318497020-318498633	LpSDUF247-I_chromosome1	79	DUF247
DUF247I-S2	Chr5	404789636	320968573-320970168	LpSDUF247-I_chromosome1	78	DUF247
DUF247II-S	Chr5	404789636	321328185-321329825	LpSDUF247-II_chromosome1	75	DUF247
HPS10-S1	Chr5	404789636	321049928-321050064, 321050208-321050331	LpsS_chromosome1	54	-
HPS10-S2	Chr5	404789636	321106389-321106525, 321106669-321106792	LpsS_chromosome1	54	-
DUF247I-Z1	Chr3	554019051	427241029-427242666	LpZDUF247-I_chromosome2	62	DUF247
DUF247I-Z2	Chr3	554019051	539298509-539300125	LpZDUF247-I_chromosome2	59	DUF247
DUF247I-Z1	Chr3	554019051	427038058-427039734	LrDUF247II-Z	87	DUF247
DUF247I-Z2	Chr3	554019051	539258861-539260495	LrDUF247II-Z	47	DUF247
HPS10-Z1ψ	Chr3	554019051	427182661-427182770, 427182864-427183017	AsativaHPS10-Z	58	-
HPS10-Z2ψ	Chr3	554019051	539260892-539261001, 539261143-539261227	LmsZ_scaffold1905	53	-

Downloads

The Alopecurus myosuroides S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Alopecurus_myosuroides

Publications

Cai L, Comont D, MacGregor D, Lowe C, Beffa R, Neve P, Saski C. The blackgrass genome reveals patterns of non-parallel evolution of polygenic herbicide resistance. New Phytol. 2023 Mar;237(5):1891-1907. doi: 10.1111/nph.18655.

Kersten S, Chang J, Huber CD, Voichek Y, Lanz C, Hagmaier T, Lang P, Lutz U, Hirschberg I, Lerchl J, Porri A, Van de Peer Y, Schmid K, Weigel D, Rabanal FA. Standing genetic variation fuels rapid evolution of herbicide resistance in blackgrass. Proc Natl Acad Sci U S A. 2023 Apr 18;120(16):e2206808120. doi: 10.1073/pnas.2206808120.