Description

Arabidopsis lyrata, the lyrate rockcress, is a species of flowering plant in the family Brassicaceae, closely related to the model organism Arabidopsis thaliana.

Whole Genomes

Whole Genome Sequences & Annotations for Arabidopsis lyrata

• Arabidopsis lyrata ALyr_1.0

S genes

Arabidopsis lyrata ALyr_1.0 S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTp Hit	BLASTp %ID
SRK	scaffold_7	22694941	9434460-9435762,9436251-9436415, 9436470-9436669,9436725-9436935, 9437019-9437256,9437350-9437500, 9437581-9437910	SRKb_AB052756.1_prot_BAB40987.1	98.0
SCR	scaffold_7	22694941	9475859-9475985,9476004-9476179	SCRb_AB052754.1_prot_BAB40985.1	63.6

Downloads

The Arabidopsis lyrata S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Arabidopsis_lyrata

Publications

Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, Schneeberger K, Spannagl M, Wang X, Yang L, Nasrallah ME, Bergelson J, Carrington JC, Gaut BS, Schmutz J, Mayer KF, Van de Peer Y, Grigoriev IV, Nordborg M, Weigel D, Guo YL. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet. 2011 May;43(5):476-81. doi: 10.1038/ng.807.

Akama S, Shimizu-Inatsugi R, Shimizu KK, Sese J. Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis. Nucleic Acids Res. 2014 Apr;42(6):e46. doi: 10.1093/nar/gkt1376.

Kolesnikova UK, Scott AD, Van de Velde JD, Burns R, Tikhomirov NP, Pfordt U, Clarke AC, Yant L, Seregin AP, Vekemans X, Laurent S, Novikova PY. Transition to Self-compatibility Associated With Dominant S-allele in a Diploid Siberian Progenitor of Allotetraploid Arabidopsis kamchatica Revealed by Arabidopsis lyrata Genomes. Mol Biol Evol. 2023 Jul 5;40(7):msad122. doi: 10.1093/molbev/msad122.

Bramsiepe J, Krabberød AK, Bjerkan KN, Alling RM, Johannessen IM, Hornslien KS, Miller JR, Brysting AK, Grini PE. Structural evidence for MADS-box type I family expansion seen in new assemblies of Arabidopsis arenosa and A. lyrata. Plant J. 2023 Nov;116(3):942-961. doi: 10.1111/tpj.16401.