| Analysis Name | Arabidopsis halleri Ahal2.2 Assembly & Annotation |
| Sequencing technology | - |
| Assembly method | - |
| Release Date | 2016-09-29 |
No publication. NCBI BioProject PRJEB12914. Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology.
Assembly statistics
| Genome size | 196.2 Mb |
| Total ungapped length | 167.2 Mb |
| Number of scaffolds | 2,239 |
| Scaffold N50 | 712.2 kb |
| Scaffold L50 | 71 |
| Number of contigs | 19,445 |
| Contig N50 | 15.1 kb |
| Contig L50 | 3,224 |
| GC percent | 36 |
| Genome coverage | 430.0x |
| Assembly level | Scaffold |
The Arabidopsis halleri Ahal2.2 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_900078215.1_Ahal2.2_genomic.fna.gz |
The Arabidopsis halleri Ahal2.2 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Arabidopsis halleri Ahal2.2 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Scaffold | Size(bp) | Coordinates | BLASTp Hit | BLASTp %ID |
| SRK | FJVB01000104 | 528,355 | 14156-15449,13038-13172,12704-12939,12469-12679,12151-12377,11894-11995,11486-11809 | sp|P0DH87|PSRK_ARATH | 63.3 |
| SCR | FJVB01000082 | 645,582 | 551450-551519,551160-551365 | XP_006301215.1 | 73.3 |
Nucleotide
Protein