Description

Arabidopsis arenosa, the sand rock-cress, is a species of flowering plant in the family Brassicaceae. It is found mostly in Central Europe in both a diploid and an autotetraploid form. This sets it apart from the other, mostly diploid, Arabidopsis species including the closely related Arabidopsis lyrata or Arabidopsis thaliana, the model plant species.

Whole Genomes

Whole Genome Sequences & Annotations for Arabidopsis arenosa

• Arabidopsis arenosa UiO_Aaren_v1.0

S genes

Arabidopsis arenosa UiO_Aaren_v1.0 S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTp Hit	BLASTp %ID
SRK	scaffold_7	21434880	8227742-8229044,8229931-8230065,8230163-8230344, 8230422-8230632,8230720-8230957,8231047-8231197, 8231284-8231613	spP0DH86SRK_ARATH	65
SCR	scaffold_7	21434880	11026945-11027014,11026539-11026768	XP_006414465.1	78

Downloads

The Arabidopsis arenosa S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Arabidopsis_arenosa

Publications

Burns R, Mandáková T, Gunis J, Soto-Jiménez LM, Liu C, Lysak MA, Novikova PY, Nordborg M. Gradual evolution of allopolyploidy in Arabidopsis suecica. Nat Ecol Evol. 2021 Oct;5(10):1367-1381. doi: 10.1038/s41559-021-01525-w.

Bramsiepe J, Krabberød AK, Bjerkan KN, Alling RM, Johannessen IM, Hornslien KS, Miller JR, Brysting AK, Grini PE. Structural evidence for MADS-box type I family expansion seen in new assemblies of Arabidopsis arenosa and A. lyrata. Plant J. 2023 Nov;116(3):942-961. doi: 10.1111/tpj.16401.

Barragan AC, Collenberg M, Schwab R, Kersten S, Kerstens MHL, Požárová D, Bezrukov I, Bemm F, Kolár F, Weigel D. Deleterious phenotypes in wild Arabidopsis arenosa populations are common and linked to runs of homozygosity. G3 (Bethesda). 2024 Mar 6;14(3):jkad290. doi: 10.1093/g3journal/jkad290.