| Analysis Name | Malus asiatica MA Assembly & Annotation |
| Sequencing technology | ！！！ |
| Assembly method | ！！！ |
| Release Date | ！！！ |
Wang T, Duan S, Xu C, Wang Y, Zhang X, Xu X, Chen L, Han Z, Wu T. Pan-genome analysis of 13 Malus accessions reveals structural and sequence variations associated with fruit traits. Nat Commun. 2023 Nov 15;14(1):7377. doi: 10.1038/s41467-023-43270-7.
Abstract
Assembly statistics
| Genome size | 662.4 Mb |
| Total ungapped length | 662.4 Mb |
| Number of chromosomes | 17 |
| Number of scaffolds | 80 |
| Scaffold N50 | 37.5 Mb |
| Scaffold L50 | 8 |
| Number of contigs | 91 |
| Contig N50 | 36.2 Mb |
| Contig L50 | 8 |
| GC percent | 38 |
| Genome coverage | 30.0x |
| Assembly level | Chromosome |
The Malus asiatica MA Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | DNA |
Functional annotation for the Malus asiatica MA is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).
Downloads
| Domain from InterProScan | TSV |
Malus S genes Nucleotide
Malus S genes Protein