Brassica napus Da-Ae

Overview

Genus Brassica
Species napus
Common Name Oilseed rape
Abbreviation B. napus
Ploidy Diploid
Chromosome Number 2n=2x=38
Genome Size 1 Gb
Genome Assemblies 6
Cross Reference NCBI taxon: 3708

Organism Image

Description

Brassica napus grows to 100 cm (39 in) in height with hairless, fleshy, pinnatifid and glaucous lower leaves which are stalked whereas the upper leaves have no petioles. B. napus can be distinguished from B. nigra by the upper leaves which do not clasp the stem, and from B. rapa by its smaller petals which are less than 13 mm (1⁄2 in) across.

Rapeseed flowers are bright yellow and about 17 mm (2⁄3 in) across. They are radial and consist of four petals in a typical cross-form, alternating with four sepals. They have indeterminate racemose flowering starting at the lowest bud and growing upward in the following days. The flowers have two lateral stamens with short filaments, and four median stamens with longer filaments whose anthers split away from the flower's center upon flowering.

The rapeseed pods are green and elongated siliquae during development that eventually ripen to brown. They grow on pedicels 1 to 3 cm (3⁄8 to 1+3⁄16 in) long, and can range from 5 to 10 cm (2 to 4 in) in length. Each pod has two compartments separated by an inner central wall within which a row of seeds develops. The seeds are round and have a diameter of 1.5 to 3 mm (1⁄16 to 1⁄8 in). They have a reticulate surface texture, and are black and hard at maturity.

Assembly

Total Scaffold Length (bp) 1 Gb
Number of Scaffolds 3,164
Shortest Scaffold from L50 set (N50) 48.2 Mb
Number of Contigs 4,004
Shortest Contig from L50 set (N50) 1.6 Mb
Number of Protein-coding Transcripts 96440
Number of Protein-coding Genes 96440
BUSCO 99.7
Assembly level Chromosome

SI genes

Downloads

Publication

Davis JT, Li R, Kim S, Michelmore R, Kim S, Maloof JN. Whole-genome sequence of synthetically derived Brassica napus inbred cultivar Da-Ae. G3 (Bethesda). 2023 Apr 11;13(4):jkad026. doi: 10.1093/g3journal/jkad026. PMID: 36724115; PMCID: PMC10085753.

© 2023 National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences